View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 454-NF4349-Insertion-11 (Length: 145)

Name: 454-NF4349-Insertion-11
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 454-NF4349-Insertion-11
454-NF4349-Insertion-11
[»] chr1 (1 HSPs)
chr1 (1-145)||(37164159-37164303)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 37164303 - 37164159
Alignment:
1 aatctagcatttgactctaaacctcatatttactataacaacttctaaaccattcttcaataatctacattcaaacaaatttctattttggacaccattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
37164303 aatctagcatttgactctaaacctcatatttactataacaacttctaaaccattcttcaataatctacattcaaacatatttctattttggacaccattc 37164204  T
101 tgaattgcacactccggtagggtttgacggaggattaccaccgcc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
37164203 tgaattgcacactccggtagggtttgacggaggattaccaccgcc 37164159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Noble Research Institute, LLC