View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: 454-NF4349-Insertion-22 (Length: 107)

Name: 454-NF4349-Insertion-22
Description: 454-NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] 454-NF4349-Insertion-22
454-NF4349-Insertion-22
[»] chr7 (1 HSPs)
chr7 (4-107)||(48080608-48080711)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 48080608 - 48080711
Alignment:
4 aaatagaagttcttgaatgtttataaactttgagtgtttgagtgttcattgtacacaattgatgtttcaaccttgttttgaatttttgttgggacatttg 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
48080608 aaatagaagttcttgattgtttataaactttgagtgtttgagtgttcattgtacacaattgatgtttcaaccttgttttgaatttttgttgggacatttt 48080707  T
104 ttag 107  Q
    ||||    
48080708 ttag 48080711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Noble Research Institute, LLC

This website was viewed 84155 times since January 2019
Visitors: 2323