View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: D682-LTR4-TNT-insertion-1 (Length: 205)

Name: D682-LTR4-TNT-insertion-1
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] D682-LTR4-TNT-insertion-1
D682-LTR4-TNT-insertion-1
[»] chr1 (1 HSPs)
chr1 (6-197)||(49475420-49475611)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 49475420 - 49475611
Alignment:
6 caaaacataccggaacagcccaaaaaggaatggtgttatctttcagtgggtatctaaggtccgtcatcatatcctctccaacaaaacggtgaaatggctc 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
49475420 caaaacataccggaacagcccaaaaaggaatagtgttatctttcagtgggtatctaaggtccgtcatcatatcttctccaacaaaacggtgaaatggctc 49475519  T
106 tattatattcaagacagcatcaattaccacaagaagcaaaagaatcaaccagtcatgcatatgtatccttgcgactctagctccatgtgatc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
49475520 tattatattcaagacagcatcaattaccacaagaagcaaaagaatcaaccagtcatgcatatgtatccttgcaactctagctccatgtgatc 49475611  T

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