View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: D682-LTR4-TNT-insertion-14 (Length: 210)

Name: D682-LTR4-TNT-insertion-14
Description: D682-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] D682-LTR4-TNT-insertion-14
D682-LTR4-TNT-insertion-14
[»] scaffold0179 (1 HSPs)
scaffold0179 (8-202)||(3706-3900)


Alignment Details
Target: scaffold0179 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 3900 - 3706
Alignment:
8 ctagccaccaaaataagtgaaacaatgacacgaaataaaagattcggctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3900 ctagccaccaaaataagtgaaacaatgacacgaaataaaagattcagctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatct 3801  T
108 gggtatatgtcacctgtgtaaaaccttcttttctcttttgtccaatttttgccnnnnnnnccgtagcttctttgtgataccaatgactggtgatc 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
3800 gggtatttgtcacctgtgtaaaaccttcttttctcttttgtccaatttttgcctttttttccgtagcttctttgtgataccaatgactggtgatc 3706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Noble Research Institute, LLC