View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9134J-LTR4-TNT-insertion-1 (Length: 199)

Name: F9134J-LTR4-TNT-insertion-1
Description: F9134J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9134J-LTR4-TNT-insertion-1
F9134J-LTR4-TNT-insertion-1
[»] chr5 (1 HSPs)
chr5 (4-189)||(14518176-14518361)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 14518361 - 14518176
Alignment:
4 aacactgatggcattcacttgcaaaatacacaggatgtagaaattcaacactctaatattggaactggtaagacattaaattaatttattttatatgact 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14518361 aacactgatggcattcacttgcaaaatacacaggatgtagaaattcaacactctaatattggaactggtaagacattaaattaatttattttatatgact 14518262  T
104 atctatctagcatcggcaattcggattaaagaagtgtcttgtatccgacactgagacgacattgacacgtgtggtttcgttcaatt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14518261 atctatctagcatcggcaattcggattaaagaagtgtcttgtatccgacactgagacgacattgacacgtgtggtttcgttcaatt 14518176  T

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