View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9140J-LTR4-TNT-insertion-6 (Length: 215)

Name: F9140J-LTR4-TNT-insertion-6
Description: F9140J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9140J-LTR4-TNT-insertion-6
F9140J-LTR4-TNT-insertion-6
[»] chr4 (1 HSPs)
chr4 (7-205)||(41128578-41128776)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 41128776 - 41128578
Alignment:
7 agaggcttctcaaggttgggatgacatatgaaatatgaaacaaagtgtgatatatatgttgaccactgtgttatttatgtgtgttatatgctaaatatgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41128776 agaggcttctcaaggttgggatgacatatgaaatatgaaacaaagtgtgatatatatgttgaccactgtgttatttatgtgtgttatatgctaaatatgt 41128677  T
107 atcttgagttcaattcttcaccaattcttgtaatgtttgaatcttggagaagttaaactcgttgctctaacataaatnnnnnnngcatattgtgaatta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||||||||    
41128676 atcttgagttcaattcttcaccaattcttgtaatgtttgaatcttggagaagttaaactcattgctctaacataaataaaaaaagcatattgtgaatta 41128578  T

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