View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9164J-LTR4-TNT-insertion-12 (Length: 215)

Name: F9164J-LTR4-TNT-insertion-12
Description: F9164J-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9164J-LTR4-TNT-insertion-12
F9164J-LTR4-TNT-insertion-12
[»] chr4 (1 HSPs)
chr4 (8-205)||(21093753-21093950)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 21093753 - 21093950
Alignment:
8 gtattagcataataactatatcatgctccctaatgtattgttctttaaaagcttagagttttctcaatgttgatatatagaaaagaataacaattattga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21093753 gtattagcataataactatatcatgctccctaatgtattgttctttaaaagcttagagttttctcaatgttgatatatagaaaagaataacaattattga 21093852  T
108 agaaatggattaaatattatagggccataggcatagcagaaaataataaatttatttgnnnnnnnntaatatatttattgtgcaagtttatttaatta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
21093853 agaaatggattaaatattatagggccataggcatagcagaaaataataaatttatttgaaaaaaaataatatatttattgtgcaagtttatttaatta 21093950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Noble Research Institute, LLC

This website was viewed 105546 times since January 2019
Visitors: 2328