View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9343-LTR4-TNT-insertion-1 (Length: 182)

Name: F9343-LTR4-TNT-insertion-1
Description: F9343-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9343-LTR4-TNT-insertion-1
F9343-LTR4-TNT-insertion-1
[»] chr8 (1 HSPs)
chr8 (10-174)||(41359385-41359549)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 41359549 - 41359385
Alignment:
10 ccatcacctcctctctctttcaccacccccggtaacactcaataacagcaatagtgatataatacaaaacgtttcaaatgcaacgcatttcacacagata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41359549 ccatcacctcctctctctttcaccacccccggtaacactcaataacagcaatagtgatataatacaaaacgtttcaaatgcaacgcatttcacacagata 41359450  T
110 ttattactagggtttcaaatcggcaaaataggacaatctagattttaatttgaaattttatatta 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41359449 ttattactagggtttcaaatcggcaaaataggacaatctagattttaatttgaaattttatatta 41359385  T

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