View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9353-LTR4-TNT-insertion-2 (Length: 241)

Name: F9353-LTR4-TNT-insertion-2
Description: F9353-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9353-LTR4-TNT-insertion-2
F9353-LTR4-TNT-insertion-2
[»] chr7 (1 HSPs)
chr7 (10-231)||(31422490-31422711)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 31422490 - 31422711
Alignment:
10 aattgttgggtcagaacgattagatggagaataaccctgcatcaatatctaatgttttcatcttgtcaaaacnnnnnnnntctaatgttttcaccataat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
31422490 aattgttgggtcagaacgattagatggagaataaccctgcatcaatatctaatgttttcatcttgtcaaaacaaaaaaaatctaatgttttcaccataat 31422589  T
110 ttattcacatgaagagcgtatagtgcatcttcaaggggagcattgtctctgaatggatcacctttctgctatggtaaacaaacataaatactcaaatgtg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31422590 ttattcacatgaagagcgtatagtgcatcttcaaggggagcattgtctctgaatggatcacctttctgctatggtaaacaaacataaatactcaaatgtg 31422689  T
210 atcacgttatctaaaagcatta 231  Q
    ||||||||||||||||||||||    
31422690 atcacgttatctaaaagcatta 31422711  T

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